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Package 159/514HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 2.0.0
Sepp Hochreiter
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/fabia
Last Changed Rev: 60341 / Revision: 64395
Last Changed Date: 2011-11-15 12:46:03 -0800 (Tue, 15 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: fabia
Version: 2.0.0
Command: rm -rf fabia.buildbin-libdir && mkdir fabia.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fabia_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R fabia.buildbin-libdir
StartedAt: 2012-03-24 05:14:33 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 05:15:08 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 34.2 seconds
RetCode: 0
Status:  OK 
PackageFile: fabia_2.0.0.tgz
PackageFileSize: 981.6 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fabia.buildbin-libdir fabia_2.0.0.tar.gz'
>>>>>>> 

* installing *source* package 'fabia' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c fabiac.c -o fabiac.o
fabiac.c: In function 'spfabic':
fabiac.c:1461: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSamplesSpfabic':
fabiac.c:2853: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSpfabicResult':
fabiac.c:3071: warning: ordered comparison of pointer with integer zero
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/fabia.buildbin-libdir/fabia/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'fabia'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'fabia.Rnw' 
** testing if installed package can be loaded

* DONE (fabia)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs/i386/fabia.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=fabia.buildbin-libdir --libs-only fabia_2.0.0.tar.gz'
>>>>>>> 

* installing *source* package 'fabia' ...
checking for gcc... gcc -arch ppc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch ppc -std=gnu99 accepts -g... yes
checking for gcc -arch ppc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch ppc -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c fabiac.c -o fabiac.o
fabiac.c: In function 'spfabic':
fabiac.c:1461: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSamplesSpfabic':
fabiac.c:2853: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSpfabicResult':
fabiac.c:3071: warning: ordered comparison of pointer with integer zero
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/fabia.buildbin-libdir/fabia/libs/ppc

* DONE (fabia)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs/ppc/fabia.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=fabia.buildbin-libdir --libs-only fabia_2.0.0.tar.gz'
>>>>>>> 

* installing *source* package 'fabia' ...
checking for gcc... gcc -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic -c fabiac.c -o fabiac.o
fabiac.c: In function 'spfabic':
fabiac.c:1461: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSamplesSpfabic':
fabiac.c:2853: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSpfabicResult':
fabiac.c:3071: warning: ordered comparison of pointer with integer zero
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/fabia.buildbin-libdir/fabia/libs/x86_64

* DONE (fabia)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"