Package: affyPara

Version: 1.14.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings affyPara_1.14.0.tar.gz

StartedAt: 2012-03-23 22:58:25 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 22:59:39 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 74.3 seconds

RetCode: 0

Status:  OK

CheckDir: affyPara.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/affyPara.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘affyPara/DESCRIPTION’ ... OK
* this is package ‘affyPara’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘affyPara’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘affyPara/R/zzz.R’:
  .onLoad calls:
    require(affy)
    require(snow)

Package startup functions should not change the search path.
See section ‘Good practice’ in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘affyPara’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘affyPara.Rnw’ 
   ‘vsnStudy.Rnw’ 
** testing if installed package can be loaded

* DONE (affyPara)

name	user	system	elapsed
MAplotPara	0.000	0.000	0.001
bgcPara	0	0	0
boxplotPara	0	0	0
computeExprSetPara	0	0	0
distributeFiles	0	0	0
mergeSplitObjects	6.304	0.232	6.686
normalizeAffyBatchConstantPara	0	0	0
normalizeAffyBatchInvariantsetPara	0	0	0
normalizeAffyBatchLoessPara	0	0	0
normalizeAffyBatchLoessParaIter	0	0	0
normalizeAffyBatchQuantilesPara	0	0	0
preproPara	0	0	0
qa	0	0	0
readAffybatchPara	0	0	0
removeDistributedFiles	0.000	0.000	0.001
rmaPara	0	0	0
snowReplace	0	0	0
split	2.132	0.032	2.162
vsnPara	0.004	0.000	0.000