Back to the "Multiple platform build/check report" A  B  C  D  E  F  G [H] I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 246/514HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.8.0
Heidi Dvinge
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/HTqPCR
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: HTqPCR
Version: 1.8.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.8.0.tar.gz
StartedAt: 2012-03-24 01:00:05 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:01:27 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 81.5 seconds
RetCode: 0
Status:  OK 
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/HTqPCR.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘summary’ from package ‘base’ in package ‘HTqPCR’
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘HTqPCR.Rnw’ 
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package4.0800.0284.113
cbind0.0480.0000.047
changeCtLayout0.0320.0040.035
clusterCt0.7600.0040.764
filterCategory0.0720.0000.074
filterCtData0.1760.0000.175
heatmapSig1.2960.0041.304
limmaCtData0.7760.0080.788
mannwhitneyCtData1.1520.0001.161
normalizeCtData0.4400.0000.443
plotCVBoxes0.1600.0040.165
plotCtArray0.2600.0000.261
plotCtBoxes0.0480.0000.046
plotCtCard0.0480.0000.048
plotCtCategory3.4160.0283.458
plotCtCor0.0440.0000.042
plotCtDensity0.0320.0040.036
plotCtHeatmap2.8930.0162.945
plotCtHistogram0.0160.0000.016
plotCtOverview0.1000.0000.099
plotCtPCA0.0440.0000.047
plotCtPairs0.580.000.58
plotCtRQ0.4520.0040.454
plotCtReps0.1000.0000.101
plotCtScatter0.0200.0040.023
plotCtSignificance0.3160.0000.314
plotCtVariation0.5440.0000.543
plotGenes0.0240.0000.024
qPCRpros0.0040.0000.005
qPCRraw0.0040.0000.004
qPCRset-class0.0320.0000.033
readCtData0.0520.0040.055
setCategory6.3160.0046.324
ttestCtData0.8760.0000.881