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Package 198/514HostnameOS / ArchBUILDCHECKBUILD BIN
GeneRegionScan 1.10.0
Lasse Folkersen
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/GeneRegionScan
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneRegionScan
Version: 1.10.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings GeneRegionScan_1.10.0.tar.gz
StartedAt: 2012-03-24 00:32:28 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:37:18 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 290.0 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneRegionScan.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/GeneRegionScan.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneRegionScan/DESCRIPTION’ ... OK
* this is package ‘GeneRegionScan’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘GeneRegionScan’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.4Mb
  sub-directories of 1Mb or more:
    exec  19.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GeneRegionScan.Rcheck/00install.out:

* installing *source* package ‘GeneRegionScan’ ...
** R
** data
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GeneRegionScan.Rnw’ 
** testing if installed package can be loaded

* DONE (GeneRegionScan)

GeneRegionScan.Rcheck/GeneRegionScan-Ex.timings:

nameusersystemelapsed
addSnpPdata000
checkForFileInPath0.0200.0040.026
doProbeLinear2.6800.0162.700
doProbeTTest0.4880.0040.493
exampleProbeLevelSet0.0360.0080.043
excludeDoubleMatchingProbes000
exonStructure10.477 0.03210.637
findProbePositions0.9040.0120.913
findSequenceInGenome000
geneRegionScan73.00814.14088.627
getLocalMetaprobeIntensities0.0000.0000.001
getLocalProbeIntensities000
getMetaprobesetsFromRegionOfInterest000
getProbeLevelAnnotationForExonArrays000
getProbesetsFromMetaprobeset000
getProbesetsFromRegionOfInterest000
getSequence0.0320.0000.031
getServerProbeIntensities000
plotCoexpression51.28312.02963.976
plotOnGene17.274 0.02417.327
readGeneInput000
translateSampleNames0.0640.0000.065