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Package 196/514HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.24.0
Y. d'Aubenton-Carafa
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/GeneR
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ ERROR ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneR
Version: 2.24.0
Command: rm -rf GeneR.buildbin-libdir && mkdir GeneR.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GeneR.buildbin-libdir GeneR_2.24.0.tar.gz >GeneR-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=GeneR.buildbin-libdir --install="check:GeneR-install.out" --force-multiarch --no-vignettes --timings GeneR_2.24.0.tar.gz && mv GeneR.buildbin-libdir/* GeneR.Rcheck/ && rmdir GeneR.buildbin-libdir
StartedAt: 2012-03-24 01:26:50 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:27:44 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 54.6 seconds
RetCode: 1
Status:  ERROR  
CheckDir: GeneR.Rcheck
Warnings: NA

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GeneR.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneR/DESCRIPTION' ... OK
* this is package 'GeneR' version '2.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'GeneR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  CeCILL-2.0
Standardizable: TRUE
Standardized license specification:
  CeCILL-2
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
and.segSet: possible error in as.segSet(deb, fin): unused argument(s)
  (fin)
relist: no visible global function definition for 'error'
setParam: no visible global function definition for 'seqSize'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'Xor.globalSeg':
  'Xor.globalSeg'

S3 methods shown with full name in documentation object 'Xor.segSet':
  'Xor.segSet'

S3 methods shown with full name in documentation object 'and.globalSeg':
  'and.globalSeg'

S3 methods shown with full name in documentation object 'and.segSet':
  'and.segSet'

S3 methods shown with full name in documentation object 'as.globalSeg':
  'as.matrix.globalSeg' 'range.globalSeg'

S3 methods shown with full name in documentation object 'as.segSet':
  'as.matrix.segSet' 'as.data.frame.segSet' 'plot.segSet'

S3 methods shown with full name in documentation object 'densityProfile':
  'plot.profile'

S3 methods shown with full name in documentation object 'not.globalSeg':
  'not.globalSeg'

S3 methods shown with full name in documentation object 'not.segSet':
  'not.segSet'

S3 methods shown with full name in documentation object 'or.globalSeg':
  'or.globalSeg'

S3 methods shown with full name in documentation object 'or.segSet':
  'or.segSet'

S3 methods shown with full name in documentation object 'plot.globalSeg':
  'plot.globalSeg'

S3 methods shown with full name in documentation object 'size.globalSeg':
  'size.globalSeg'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'D:/biocbld/bbs-2.9-bioc/meat/GeneR.buildbin-libdir/GeneR/libs/i386/GeneR.dll':
  Found 'printf', possibly from 'printf' (C)
  Found 'puts', possibly from 'printf' (C), 'puts' (C)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.  The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'GeneR-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bankSummary
> ### Title: Computes informations on all a bank file
> ### Aliases: bankSummary
> ### Keywords: utilities
> 
> ### ** Examples
> 
>   for(i in 1:8)
+   {
+     s=randomSeq(n=100)
+     placeString(s,seqno=0)
+     writeFasta("toto_norm.fa",append=TRUE,name=i)
+   }
>   bankSummary(file="toto_norm.fa")
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in fun() : error in the transformation of the limits
   name   T    C    A    G X
1     1 0.2 0.27 0.32 0.21 0
2     1 0.2 0.27 0.32 0.21 0
3    10 0.2 0.27 0.32 0.21 0
4     2 0.2 0.27 0.32 0.21 0
5     2 0.2 0.27 0.32 0.21 0
6     3 0.2 0.27 0.32 0.21 0
7     3 0.2 0.27 0.32 0.21 0
8     4 0.2 0.27 0.32 0.21 0
9     4 0.2 0.27 0.32 0.21 0
10    5 0.2 0.27 0.32 0.21 0
11    5 0.2 0.27 0.32 0.21 0
12    6 0.2 0.27 0.32 0.21 0
13    6 0.2 0.27 0.32 0.21 0
14    7 0.2 0.27 0.32 0.21 0
15    7 0.2 0.27 0.32 0.21 0
16    8 0.2 0.27 0.32 0.21 0
17    8 0.2 0.27 0.32 0.21 0
18    9 0.2 0.27 0.32 0.21 0
>   bankSummary(file="toto_norm.fa",fun=seqSkew)
[1] "<readseq paramFromIndex error>"
Warning in .transf.limites(seqno, limites) : NA in from or To
Warning in compoSeq(seqno = seqno, from = from, to = to, strand = strand,  :
  error in the transformation of the limits
Warning in is.na(compos[1]) :
  is.na() applied to non-(list or vector) of type 'NULL'
Error in if (!is.na(compos[1])) { : argument is of length zero
Calls: bankSummary -> fun
Execution halted

GeneR.Rcheck/00install.out:


install for i386

* installing *source* package 'GeneR' ...
** libs
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c GeneR_glob.cc -o GeneR_glob.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c GeneR_seq.cc -o GeneR_seq.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c complementaire.cc -o complementaire.o
complementaire.cc: In function 'void buf_complementaire(int*)':
complementaire.cc:43:8: warning: variable 'comp' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c compoSeq.cc -o compoSeq.o
compoSeq.cc: In function 'void sys_exactmatch(int*, char**, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*)':
compoSeq.cc:66:7: warning: variable 'lengthRegion' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c dnaRna.cc -o dnaRna.o
dnaRna.cc: In function 'void dna_rna(int*, int*, int*, int*, int*)':
dnaRna.cc:62:15: warning: value computed is not used [-Wunused-value]
dnaRna.cc:63:13: warning: value computed is not used [-Wunused-value]
dnaRna.cc: In function 'void rna_dna(int*, int*, int*, int*, int*)':
dnaRna.cc:108:15: warning: value computed is not used [-Wunused-value]
dnaRna.cc:109:13: warning: value computed is not used [-Wunused-value]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c libIndex.cc -o libIndex.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c libStrings.cc -o libStrings.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c makeIndex.cc -o makeIndex.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c masked.cc -o masked.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c misc.cc -o misc.o
misc.cc: In function 'SEXPREC* str_to_nbstr(SEXP, SEXP)':
misc.cc:166:10: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
misc.cc:97:72: warning: 'multiple' may be used uninitialized in this function [-Wuninitialized]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c readEmblDescript.cc -o readEmblDescript.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c readIndex.cc -o readIndex.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c readLocation.cc -o readLocation.o
readLocation.cc: In function 'SEXPREC* readLocation(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
readLocation.cc:54:9: warning: variable 'lengthkey' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c readSeqEmbl.cc -o readSeqEmbl.o
readSeqEmbl.cc: In function 'void ReadSeqEMBL(char**, char**, int*, int*, int*, int*, int*)':
readSeqEmbl.cc:111:7: warning: variable 'LLBuf' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c readSeqFasta.cc -o readSeqFasta.o
readSeqFasta.cc: In function 'void ReadSeqFASTA(char**, char**, int*, int*, int*, int*, int*)':
readSeqFasta.cc:101:32: warning: variable 'length' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c readSeqGbk.cc -o readSeqGbk.o
readSeqGbk.cc: In function 'void ReadSeqGBK(char**, char**, int*, int*, int*, int*, int*)':
readSeqGbk.cc:92:7: warning: variable 'LLBuf' set but not used [-Wunused-but-set-variable]
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c seqManip.cc -o seqManip.o
seqManip.cc: In function 'void sys_placestring(char**, int*, int*)':
seqManip.cc:282:7: warning: variable 'comp' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c strcasestr.c -o strcasestr.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c translate.cc -o translate.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c upperSeq.cc -o upperSeq.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c vecteurs.cc -o vecteurs.o
g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c writeFasta.cc -o writeFasta.o
g++ -shared -s -static-libgcc -o GeneR.dll tmp.def GeneR_glob.o GeneR_seq.o complementaire.o compoSeq.o dnaRna.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GeneR.buildbin-libdir/GeneR/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GeneR.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'GeneR' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c GeneR_glob.cc -o GeneR_glob.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c GeneR_seq.cc -o GeneR_seq.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c complementaire.cc -o complementaire.o
complementaire.cc: In function 'void buf_complementaire(int*)':
complementaire.cc:43:8: warning: variable 'comp' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c compoSeq.cc -o compoSeq.o
compoSeq.cc: In function 'void sys_exactmatch(int*, char**, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*)':
compoSeq.cc:66:7: warning: variable 'lengthRegion' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c dnaRna.cc -o dnaRna.o
dnaRna.cc: In function 'void dna_rna(int*, int*, int*, int*, int*)':
dnaRna.cc:62:15: warning: value computed is not used [-Wunused-value]
dnaRna.cc:63:13: warning: value computed is not used [-Wunused-value]
dnaRna.cc: In function 'void rna_dna(int*, int*, int*, int*, int*)':
dnaRna.cc:108:15: warning: value computed is not used [-Wunused-value]
dnaRna.cc:109:13: warning: value computed is not used [-Wunused-value]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c libIndex.cc -o libIndex.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c libStrings.cc -o libStrings.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c makeIndex.cc -o makeIndex.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c masked.cc -o masked.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c misc.cc -o misc.o
misc.cc: In function 'SEXPREC* str_to_nbstr(SEXP, SEXP)':
misc.cc:166:10: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
misc.cc:97:72: warning: 'multiple' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c readEmblDescript.cc -o readEmblDescript.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c readIndex.cc -o readIndex.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c readLocation.cc -o readLocation.o
readLocation.cc: In function 'SEXPREC* readLocation(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
readLocation.cc:54:9: warning: variable 'lengthkey' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c readSeqEmbl.cc -o readSeqEmbl.o
readSeqEmbl.cc: In function 'void ReadSeqEMBL(char**, char**, int*, int*, int*, int*, int*)':
readSeqEmbl.cc:111:7: warning: variable 'LLBuf' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c readSeqFasta.cc -o readSeqFasta.o
readSeqFasta.cc: In function 'void ReadSeqFASTA(char**, char**, int*, int*, int*, int*, int*)':
readSeqFasta.cc:101:32: warning: variable 'length' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c readSeqGbk.cc -o readSeqGbk.o
readSeqGbk.cc: In function 'void ReadSeqGBK(char**, char**, int*, int*, int*, int*, int*)':
readSeqGbk.cc:92:7: warning: variable 'LLBuf' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c seqManip.cc -o seqManip.o
seqManip.cc: In function 'void sys_placestring(char**, int*, int*)':
seqManip.cc:282:7: warning: variable 'comp' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c strcasestr.c -o strcasestr.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c translate.cc -o translate.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c upperSeq.cc -o upperSeq.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c vecteurs.cc -o vecteurs.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c writeFasta.cc -o writeFasta.o
g++ -m64 -shared -s -static-libgcc -o GeneR.dll tmp.def GeneR_glob.o GeneR_seq.o complementaire.o compoSeq.o dnaRna.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GeneR.buildbin-libdir/GeneR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneR' as GeneR_2.24.0.zip

* DONE (GeneR)