Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 209/479HostnameOS / ArchBUILDCHECKBUILD BIN
goProfiles 1.15.0
Alex Sanchez
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/goProfiles
Last Changed Rev: 54810 / Revision: 56603
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: goProfiles
Version: 1.15.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch goProfiles_1.15.0.tar.gz
StartedAt: 2011-07-07 02:08:49 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 02:10:31 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 102.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: goProfiles.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.15.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See 'E:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck/00check.log'
for details

goProfiles.Rcheck/00install.out:

* installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'goProfiles.Rnw' 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

* DONE (goProfiles)

goProfiles.Rcheck/goProfiles-Ex.timings:

nameusersystemelapsed
CD4ids0.010.000.03
GOTermsList000
basicProfile 3.47 0.1312.74
compSummary2.090.063.39
compareGOProfiles2.050.022.07
compareGeneLists8.200.159.66
compareProfilesLists000
contractedProfile0.770.020.78
conversionFunctions0.040.000.03
drosophila0.000.010.02
equivSummary000
equivalentGOProfiles1.680.021.70
expandedLevel1.850.001.87
expandedProfile0.470.000.47
fisherGOProfiles5.010.035.10
fitGOProfile000
hugoIds0.030.000.03
mergeProfilesLists3.170.003.20
ngenes0.860.000.87
omimIds000
plotProfiles3.460.003.50
printProfiles4.600.034.70
prostateIds000