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Package 147/479HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 1.5.0
Sepp Hochreiter
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fabia
Last Changed Rev: 56066 / Revision: 56603
Last Changed Date: 2011-06-08 15:07:12 -0700 (Wed, 08 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: fabia
Version: 1.5.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch fabia_1.5.0.tar.gz
StartedAt: 2011-07-07 03:45:48 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:47:26 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 98.7 seconds
RetCode: 0
Status:  OK  
CheckDir: fabia.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/fabia.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fabia/DESCRIPTION' ... OK
* this is package 'fabia' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'fabia' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

fabia.Rcheck/00install.out:

* installing *source* package 'fabia' ...
Building libRcpp.a in RcppSrc...
rm -f Rcpp.o  libRcpp.a
x86_64-w64-mingw32-g++  -c Rcpp.cpp -o Rcpp.o -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/BBS-2˜1.9-B/R/src/include"  -Wall -O2
x86_64-w64-mingw32-ar r libRcpp.a Rcpp.o
C:\Rtools213\MinGW64\bin\x86_64-w64-mingw32-ar.exe: creating libRcpp.a
x86_64-w64-mingw32-ranlib  libRcpp.a
rm -f Rcpp.o
rm -f Rcpp.o 
** libs
  running src/Makefile.win ...
rm -f fabia.o fabia.dll *.a *.o *.so *.dll
x86_64-w64-mingw32-g++  -c fabiac.cpp -o fabia.o -I../RcppSrc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Wall -O2
x86_64-w64-mingw32-g++  -shared -s -static-libgcc fabia.o -L../RcppSrc -lRcpp  -L"D:/biocbld/BBS-2˜1.9-B/R/bin/x64"  -lR  -o fabia.dll 
rm -f fabia.o *.a *.o *.so
installing to D:/biocbld/bbs-2.9-bioc/meat/fabia.Rcheck/fabia/libs/x64
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for "plot" from package "graphics" in package "fabia"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'fabia.Rnw' 
** testing if installed package can be loaded

* DONE (fabia)

fabia.Rcheck/fabia-Ex.timings:

nameusersystemelapsed
estimateMode0.050.000.04
extractBic0.160.000.18
extractPlot0.420.000.42
fabi0.500.000.54
fabia0.200.000.22
fabiaDemo000
fabiaVersion000
fabiap0.220.000.22
fabias0.140.000.14
fabiasp0.970.000.97
makeFabiaData0.050.041.53
makeFabiaDataBlocks0.060.050.14
makeFabiaDataBlocksPos0.030.080.11
makeFabiaDataPos0.020.060.10
matrixImagePlot0.030.080.11
mfsc0.140.000.14
nmfdiv0.140.000.14
nmfeu0.110.020.12
nmfsc0.030.000.03
plot-methods2.510.012.55
plotBicluster0.190.020.20
projFunc000
projFuncPos0.000.010.01
show-methods0.30.00.3
showSelected-methods0.290.020.31
summary-methods0.270.000.27