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Package 134/479HostnameOS / ArchBUILDCHECKBUILD BIN
dyebias 1.11.0
Philip Lijnzaad
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/dyebias
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: dyebias
Version: 1.11.0
Command: mkdir dyebias.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=dyebias.buildbin-libdir dyebias_1.11.0.tar.gz >dyebias-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=dyebias.buildbin-libdir --install="check:dyebias-install.out" --force-multiarch --no-vignettes --timings dyebias_1.11.0.tar.gz && mv dyebias.buildbin-libdir/* dyebias.Rcheck/ && rmdir dyebias.buildbin-libdir
StartedAt: 2011-07-07 04:49:47 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 04:52:04 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 137.5 seconds
RetCode: 0
Status:  OK  
CheckDir: dyebias.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/dyebias.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dyebias/DESCRIPTION' ... OK
* this is package 'dyebias' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'dyebias' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dyebias.apply.correction: no visible global function definition for
  'maR<-'
dyebias.apply.correction: no visible global function definition for
  'maG<-'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

dyebias.Rcheck/00install.out:


install for i386

* installing *source* package 'dyebias' ...
** R
** inst
** preparing package for lazy loading
Loading required package: limma

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'dyebias-vignette.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'dyebias' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dyebias' as dyebias_1.11.0.zip

* DONE (dyebias)

dyebias.Rcheck/dyebias-Ex.timings:

nameusersystemelapsed
dyebias.application.subset6.960.057.00
dyebias.apply.correction7.520.097.61
dyebias.boxplot6.470.026.49
dyebias.estimate.iGSDBs2.540.012.56
dyebias.monotonicity000
dyebias.monotonicityplot000
dyebias.rgplot7.180.007.18
dyebias.trendplot6.850.026.86