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Package 19/479HostnameOS / ArchBUILDCHECKBUILD BIN
affyILM 1.5.0
Myriam Kroll and Fabrice Berger
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affyILM
Last Changed Rev: 56153 / Revision: 56603
Last Changed Date: 2011-06-13 15:40:41 -0700 (Mon, 13 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: affyILM
Version: 1.5.0
Command: mkdir affyILM.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=affyILM.buildbin-libdir affyILM_1.5.0.tar.gz
StartedAt: 2011-07-07 06:44:33 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 06:45:02 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 29.5 seconds
RetCode: 0
Status:  OK  
PackageFile: affyILM_1.5.0.zip
PackageFileSize: 211.1 KiB

Command output


install for i386

* installing *source* package 'affyILM' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c affyilm.c -o affyilm.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c enval.c -o enval.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c get_backg.c -o get_backg.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c multAB.c -o multAB.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c multXty.c -o multXty.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -mtune=core2 -c points.c -o points.o
gcc -shared -s -static-libgcc -o affyILM.dll tmp.def affyilm.o enval.o get_backg.o init.o multAB.o multXty.o points.o -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/affyILM.buildbin-libdir/affyILM/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'affyILM.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'affyILM' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c affyilm.c -o affyilm.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c enval.c -o enval.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c get_backg.c -o get_backg.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c multAB.c -o multAB.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c multXty.c -o multXty.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -mtune=core2 -c points.c -o points.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o affyILM.dll tmp.def affyilm.o enval.o get_backg.o init.o multAB.o multXty.o points.o -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/affyILM.buildbin-libdir/affyILM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affyILM' as affyILM_1.5.0.zip

* DONE (affyILM)