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Package 196/479HostnameOS / ArchBUILDCHECKBUILD BIN
GenomicRanges 1.5.16
Biocore Team c/o BioC user list
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges
Last Changed Rev: 56570 / Revision: 56603
Last Changed Date: 2011-07-05 14:16:40 -0700 (Tue, 05 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomicRanges
Version: 1.5.16
Command: mkdir GenomicRanges.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=GenomicRanges.buildbin-libdir GenomicRanges_1.5.16.tar.gz
StartedAt: 2011-07-07 07:00:36 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 07:00:55 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 19.3 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicRanges_1.5.16.zip
PackageFileSize: 1.361 MiB

Command output

* installing *source* package 'GenomicRanges' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O2 -Wall  -std=gnu99 -c IRanges_stubs.c -o IRanges_stubs.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O2 -Wall  -std=gnu99 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O2 -Wall  -std=gnu99 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:841:23: warning: 'width' may be used uninitialized in this function
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1168:9: warning: 'n' may be used uninitialized in this function
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include"      -O2 -Wall  -std=gnu99 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:207:44: warning: 'nlocs' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GenomicRangesIntroduction.Rnw' 
   'GenomicRangesUseCases.Rnw' 
   'countGenomicOverlaps.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.5.16.zip

* DONE (GenomicRanges)