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Package 192/479HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.13.0
Steffen Durinck
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomeGraphs
Version: 1.13.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.13.0.tar.gz
StartedAt: 2011-07-07 00:40:48 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 00:42:34 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 106.3 seconds
RetCode: 0
Status:  OK 
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/GenomeGraphs.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK
* this is package ‘GenomeGraphs’ version ‘1.13.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GenomeGraphs’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* installing *source* package ‘GenomeGraphs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GenomeGraphs.Rnw’ 
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class0.0000.0000.002
BaseTrack-class000
DisplayPars-class0.0000.0000.002
DisplayPars0.4760.0163.549
ExonArray-class0.0040.0000.004
Gene-class000
GeneModel-class0.1120.0120.123
GeneRegion-class000
GenericArray-class0.0000.0000.001
GenomeAxis-class0.0000.0000.001
HighlightRegion-class0.0040.0000.001
Ideogram-class000
ImplementsTrackOverlay-class0.0000.0000.001
Legend-class0.0000.0000.001
MappedRead-class0.0000.0000.001
Overlay-class0.0000.0000.001
RectangleOverlay-class0.0000.0000.001
Segmentation-class0.0000.0000.001
Smoothing-class0.0000.0000.001
TextOverlay-class0.0000.0000.001
Title-class0.0000.0000.001
TrackOverlay-class0.0000.0000.001
Transcript-class0.0040.0000.000
TranscriptRegion-class0.0000.0000.001
cn000
exonProbePos0.0000.0000.001
gdObject-class0.0000.0000.002
gdPlot 1.936 0.00860.693
getPar0.0000.0000.002
getSize0.0000.0000.001
ideogramTab0.0040.0000.004
intensity000
makeAnnotationTrack0.0320.0000.032
makeBaseTrack0.0000.0000.002
makeExonArray0.0000.0000.002
makeGene0.0000.0000.001
makeGeneModel000
makeGeneRegion0.0000.0000.001
makeGenericArray0.0040.0000.001
makeGenomeAxis000
makeIdeogram0.0000.0000.001
makeLegend000
makeRectangleOverlay0.0760.0000.074
makeSegmentation0.0560.0000.059
makeSmoothing0.0840.0000.086
makeTextOverlay0.0680.0040.071
makeTitle0.0000.0000.001
makeTranscript0.0000.0000.001
probestart000
segEnd000
segStart000
segments000
seqDataEx0.0240.0000.024
setPar0.0200.0000.021
showDisplayOptions0.0040.0000.002
unrData000
unrNProbes000
unrPositions000
yeastCons10.0000.0000.001