Package: GGtools

Version: 3.11.31

Command: mkdir GGtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GGtools_3.11.31.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R GGtools.buildbin-libdir

StartedAt: 2011-07-07 06:40:34 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 06:41:41 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 67.9 seconds

RetCode: 0

Status:  OK

PackageFile: GGtools_3.11.31.tgz

PackageFileSize: 57.43 MiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=GGtools.buildbin-libdir GGtools_3.11.31.tar.gz'
>>>>>>> 

* installing *source* package 'GGtools' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: snpStats
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: RSQLite
Loading required package: DBI
Loading required package: AnnotationDbi

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: RCurl
Loading required package: bitops

Warning: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
Loading package bit1.1-7

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit

Warning: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
Loading package ff2.2-2
- getOption("fftempdir")=="/tmp/Rtmpj8QSeM"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system

in method for 'coerce' with signature '"multffManager","eqtlTestsManager"': no definition for class "multffManager"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GGtools_2011.Rnw' 
   'binf09supp.Rnw' 
   'external.Rnw' 
** testing if installed package can be loaded
Warning messages:
1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 

* DONE (GGtools)