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Package 127/479HostnameOS / ArchBUILDCHECKBUILD BIN
DEXSeq 0.1.10
Alejandro Reyes
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEXSeq
Last Changed Rev: 56539 / Revision: 56603
Last Changed Date: 2011-07-04 09:07:13 -0700 (Mon, 04 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: DEXSeq
Version: 0.1.10
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DEXSeq_0.1.10.tar.gz
StartedAt: 2011-07-07 02:42:01 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 02:42:50 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 48.9 seconds
RetCode: 0
Status:  OK 
CheckDir: DEXSeq.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/DEXSeq.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DEXSeq/DESCRIPTION' ... OK
* this is package 'DEXSeq' version '0.1.10'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEXSeq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

DEXSeq.Rcheck/00install.out:

* installing *source* package 'DEXSeq' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'DEXSeq.Rnw' 
** testing if installed package can be loaded

* DONE (DEXSeq)

DEXSeq.Rcheck/DEXSeq-Ex.timings:

nameusersystemelapsed
DEXSeqHTML000
ExonCountSet-class000
assertOneWay0.2590.0090.284
countTableForGene0.0630.0040.068
counts0.0250.0030.027
design0.0280.0020.031
estimateDispersions0.0000.0000.001
estimateExonDispersionsForModelFrame0.4890.0520.562
estimateSizeFactors0.0600.0040.066
exonIDs0.0340.0070.042
geneCountTable0.0600.0040.064
geneIDs0.0370.0040.041
modelFrameForGene0.0390.0060.047
newExonCountSet0.3200.0230.348
plotDEXSeq0.0010.0000.000
read.HTSeqCounts0.0070.0060.066
sizeFactors0.0650.0030.070
subsetByGenes0.0830.0080.091
testForDEU0.1160.0050.123
testGeneForDEU0.0260.0030.029