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Package 105/479HostnameOS / ArchBUILDCHECKBUILD BIN
CoGAPS 1.3.0
Elana J. Fertig , Michael F. Ochs
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CoGAPS
Last Changed Rev: 54810 / Revision: 56603
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: CoGAPS
Version: 1.3.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings CoGAPS_1.3.0.tar.gz
StartedAt: 2011-07-07 00:11:06 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 00:11:26 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 19.8 seconds
RetCode: 0
Status:  OK 
CheckDir: CoGAPS.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/CoGAPS.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* this is package ‘CoGAPS’ version ‘1.3.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘CoGAPS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

CoGAPS.Rcheck/00install.out:

* installing *source* package ‘CoGAPS’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: coda
Loading required package: lattice
module basemod loaded
module bugs loaded
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.8.0 (2011-04-03) successfully loaded. See ?R.oo for help.
R.utils v1.7.5 (2011-04-12) successfully loaded. See ?R.utils for help.
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘CoGAPSUsersManual.Rnw’ 
** testing if installed package can be loaded
module basemod loaded
module bugs loaded

* DONE (CoGAPS)

CoGAPS.Rcheck/CoGAPS-Ex.timings:

nameusersystemelapsed
CoGAPS000
GAPS000