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Package 90/479HostnameOS / ArchBUILDCHECKBUILD BIN
ChIPsim 1.7.2
Peter Humburg
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ChIPsim
Last Changed Rev: 55661 / Revision: 56603
Last Changed Date: 2011-05-18 01:30:45 -0700 (Wed, 18 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ChIPsim
Version: 1.7.2
Command: mkdir ChIPsim.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPsim.buildbin-libdir ChIPsim_1.7.2.tar.gz >ChIPsim-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=ChIPsim.buildbin-libdir --install="check:ChIPsim-install.out" --force-multiarch --no-vignettes --timings ChIPsim_1.7.2.tar.gz && mv ChIPsim.buildbin-libdir/* ChIPsim.Rcheck/ && rmdir ChIPsim.buildbin-libdir
StartedAt: 2011-07-07 04:34:16 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 04:37:39 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 202.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ChIPsim.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/ChIPsim.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChIPsim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChIPsim' version '1.7.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ChIPsim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ChIPsim.Rcheck/00install.out:


install for i386

* installing *source* package 'ChIPsim' ...
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ChIPsimIntro.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'ChIPsim' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPsim' as ChIPsim_1.7.2.zip

* DONE (ChIPsim)

ChIPsim.Rcheck/ChIPsim-Ex.timings:

nameusersystemelapsed
ChIPsim-package000
bindDens2readDens3.630.063.70
decodeQuality000
defaultControl0.020.000.02
defaultErrorProb000
defaultFunctions000
defaultGenerator0.110.000.11
extractQuality000
feat2dens1.420.011.44
featureDensity000
makeFeatures0.130.000.12
placeFeatures0.180.000.19
pos2fastq0.080.000.08
readError000
reconcileFeatures0.190.000.18
sampleReads2.530.002.53
simChIP000
simpleNames000
stableFeature000
writeFASTQ000