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Package 28/479HostnameOS / ArchBUILDCHECKBUILD BIN
AgiMicroRna 2.3.1
Pedro Lopez-Romero
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AgiMicroRna
Last Changed Rev: 55341 / Revision: 56603
Last Changed Date: 2011-05-08 20:15:32 -0700 (Sun, 08 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: AgiMicroRna
Version: 2.3.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch AgiMicroRna_2.3.1.tar.gz
StartedAt: 2011-07-07 01:19:13 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 01:28:06 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 532.8 seconds
RetCode: 0
Status:  OK 
CheckDir: AgiMicroRna.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/AgiMicroRna.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'AgiMicroRna/DESCRIPTION' ... OK
* this is package 'AgiMicroRna' version '2.3.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AgiMicroRna' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
               old_size new_size compress
  dd.micro.rda    1.7Mb    1.2Mb       xz
  ddPROC.rda       54Kb     45Kb       xz
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

AgiMicroRna.Rcheck/00install.out:

* installing *source* package 'AgiMicroRna' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI

Loading required package: KEGG.db

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'AgiMicroRna.Rnw' using 'latin1' 
** testing if installed package can be loaded

* DONE (AgiMicroRna)

AgiMicroRna.Rcheck/AgiMicroRna-Ex.timings:

nameusersystemelapsed
HeatMapMicroRna1.3450.1371.533
PCAplotMicroRna0.3730.0110.384
RleMicroRna3.6970.1183.827
basicLimma0.0000.0000.001
boxplotMicroRna0.6910.0630.756
cvArray0.0010.0000.001
filterMicroRna2.6710.3343.012
getDecideTests0.0010.0000.000
hierclusMicroRna0.0190.0040.023
mvaBASIC3.0700.0923.390
mvaMicroRna23.749 0.33224.229
plotDensityMicroRna0.4960.0420.541
pvalHistogram000
qcPlots000
readMicroRnaAFE0.0010.0000.000
rmaMicroRna105.146 80.217189.766
significantMicroRna1.2410.1131.658
tgsMicroRna0.8340.1631.006
tgsNormalization000
uRNAList0.0000.0010.000
writeEset000