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Package 284/462HostnameOS / ArchBUILDCHECKBUILD BIN
metahdep 1.11.0
John R. Stevens
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/metahdep
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: metahdep
Version: 1.11.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings metahdep_1.11.0.tar.gz
StartedAt: 2011-05-09 13:17:28 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 13:18:04 -0700 (Mon, 09 May 2011)
EllapsedTime: 35.8 seconds
RetCode: 0
Status:  OK 
CheckDir: metahdep.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/metahdep.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘metahdep/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metahdep’ version ‘1.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘metahdep’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: metahdep.other.Rd:40-42: Dropping empty section \usage
prepare_Rd: metahdep.other.Rd:43-45: Dropping empty section \arguments
prepare_Rd: metahdep.other.Rd:46-48: Dropping empty section \value
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

metahdep.Rcheck/00install.out:

* installing *source* package ‘metahdep’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c metahdep.c -o metahdep.o
metahdep.c: In function ‘get_row_indices2’:
metahdep.c:471:5: warning: passing argument 5 of ‘metan_binary_search_unique’ makes integer from pointer without a cast
metahdep.c:372:6: note: expected ‘char’ but argument is of type ‘const char *’
gcc -std=gnu99 -shared -L/usr/local/lib64 -o metahdep.so metahdep.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/metahdep.Rcheck/metahdep/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘metahdep.Rnw’ 
** testing if installed package can be loaded

* DONE (metahdep)

metahdep.Rcheck/metahdep-Ex.timings:

nameusersystemelapsed
ES.obj-class0.0200.0000.022
HGU.DifExp.list0.0040.0000.007
HGU.newnames0.0640.0120.075
HGU.prep.list0.0280.0000.030
getPLM.es000
gloss0.0040.0040.007
metahdep.FEMA0.0360.0000.039
metahdep.HBLM1.2200.0001.221
metahdep8.9080.0168.940
metahdep.REMA0.0480.0000.052
metahdep.format2.3880.0002.450
metahdep.other0.0040.0000.004
metaprep-class0.0240.0000.025