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Package 266/462HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.17.0
Gustavo H. Esteves
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/maigesPack
Last Changed Rev: 55307 / Revision: 55359
Last Changed Date: 2011-05-06 14:58:56 -0700 (Fri, 06 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.17.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings maigesPack_1.17.0.tar.gz
StartedAt: 2011-05-09 14:24:02 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 14:34:27 -0700 (Mon, 09 May 2011)
EllapsedTime: 624.6 seconds
RetCode: 0
Status:  OK  
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/maigesPack.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.17.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package 'maigesPack' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c Minfo.c -o Minfo.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c bootstrapT.c -o bootstrapT.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c register.c -o register.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c robustCorr.c -o robustCorr.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c stats.c -o stats.o
stats.c: In function 'stats_median_from_sorted_data':
stats.c:80:22: warning: operation on 'i' may be undefined
gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/maigesPack.Rcheck/maigesPack/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: limma
Loading required package: marray
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'maigesPack_tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI000
activeMod3.390.013.46
activeModScoreHTML1.760.021.79
activeNet4.970.015.03
activeNetScoreHTML5.060.005.07
addGeneGrps000
addPaths000
bootstrapCor0.070.000.06
bootstrapMI0.230.000.23
bootstrapT0.000.020.02
boxplot-methods163.58 4.51169.09
bracketMethods0.340.000.35
calcA0.330.070.39
calcW0.290.040.35
classifyKNN0.350.020.39
classifyKNNsc0.460.000.48
classifyLDA1.580.001.63
classifyLDAsc2.690.022.70
classifySVM0.830.000.83
classifySVMsc1.360.001.37
coerce-methods0.230.000.23
compCorr000
createMaigesRaw0.420.020.44
deGenes2by2BootT0.880.000.88
deGenes2by2Ttest0.410.000.42
deGenes2by2Wilcox0.350.010.37
deGenesANOVA0.440.020.47
designANOVA0.210.000.20
dim-methods0.140.000.14
getLabels0.150.000.16
hierM2.610.012.75
hierMde0.640.000.64
image-methods4.470.004.50
kmeansM2.830.022.92
kmeansMde0.620.010.66
loadData000
normLoc3.390.023.48
normOLIN0.130.000.13
normRepLoess0.120.000.13
normScaleLimma188.14 3.94193.44
normScaleMarray89.31 2.5892.43
plot-methods10.69 0.0311.13
plotGenePair0.20.00.2
print-methods0.270.000.27
relNet2TGF0.200.060.26
relNetworkB2.970.023.07
relNetworkM0.170.000.17
robustCorr000
selSpots0.640.000.64
show-methods0.220.000.22
somM2.720.002.74
somMde0.640.020.75
summarizeReplicates3.210.013.22
summary-methods0.210.000.22
tableClass1.190.051.23
tablesDE2.740.032.80