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Package 208/462HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.31.1
Seth Falcon
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/graph
Last Changed Rev: 54945 / Revision: 55359
Last Changed Date: 2011-04-19 13:42:15 -0700 (Tue, 19 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.31.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings graph_1.31.1.tar.gz
StartedAt: 2011-05-09 12:48:46 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 12:49:58 -0700 (Mon, 09 May 2011)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:  OK 
CheckDir: graph.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/graph.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graph/DESCRIPTION’ ... OK
* this is package ‘graph’ version ‘1.31.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘graph’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘graph_unit_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:

* installing *source* package ‘graph’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c graph.c -o graph.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o graph.so graph.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
mv graph.so BioC_graph.so
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/graph.Rcheck/graph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GraphClass.Rnw’ 
   ‘MultiGraphClass.Rnw’ 
   ‘clusterGraph.Rnw’ 
   ‘graph.Rnw’ 
   ‘graphAttributes.Rnw’ 
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0920.0000.091
IMCA0.1880.0280.310
MAPKsig0.1600.0080.170
MultiGraph-class0.1080.0000.110
acc-methods0.0240.0000.022
addEdge0.0160.0000.013
addNode0.0160.0000.015
adj-methods0.0040.0000.006
apoptosisGraph0.0280.0000.031
attrData-class0.0000.0000.002
aveNumEdges0.0160.0000.016
biocRepos0.0000.0000.002
boundary0.0080.0000.009
buildRepDepGraph000
calcProb000
calcSumProb0.0120.0000.012
clearNode0.0080.0000.008
clusterGraph-class0.0040.0000.005
clusteringCoefficient-methods0.0120.0000.013
combineNodes0.0560.0000.053
distGraph-class0.0000.0000.002
duplicatedEdges000
edgeMatrix0.0160.0000.017
edgeSets0.0280.0000.030
edgeWeights0.0080.0000.010
fromGXL-methods0.5320.0200.571
graph-class0.0120.0000.010
graph2SparseM0.2840.0080.292
graphAM-class0.0160.0040.016
graphBAM-class0.0680.0000.068
graphExamples0.0040.0000.005
graphNEL-class0.0040.0000.006
inEdges0.0040.0000.003
leaves0.0160.0000.016
listEdges0.0120.0000.015
matrix2Graph0.0320.0000.030
mostEdges0.0200.0000.024
numNoEdges0.0120.0000.012
pancrCaIni0.0960.0000.107
randomEGraph0.0120.0000.013
randomGraph0.0080.0000.009
randomNodeGraph0.0080.0000.006
removeEdge0.0120.0000.013
removeNode0.0040.0000.004
renderInfo-class0.0120.0000.013
reverseEdgeDirections0.0080.0000.012
simpleEdge-class0.0000.0000.002
standardLabeling0.0640.0040.067
subGraph0.0040.0000.002
toDotR-methods0.0400.0040.047
ugraph0.0120.0000.012
validGraph0.0040.0000.002