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Package 207/462HostnameOS / ArchBUILDCHECKBUILD BIN
gpls 1.25.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gpls
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: gpls
Version: 1.25.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings gpls_1.25.0.tar.gz
StartedAt: 2011-05-09 14:03:13 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 14:03:46 -0700 (Mon, 09 May 2011)
EllapsedTime: 33.0 seconds
RetCode: 0
Status:  OK  
CheckDir: gpls.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/gpls.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gpls/DESCRIPTION' ... OK
* this is package 'gpls' version '1.25.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gpls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: glpls1a.Rd:26-28: Dropping empty section \details
prepare_Rd: glpls1a.Rd:46: Dropping empty section \note
prepare_Rd: glpls1a.cv.error.Rd:24-26: Dropping empty section \details
prepare_Rd: glpls1a.cv.error.Rd:42: Dropping empty section \note
prepare_Rd: glpls1a.logit.all.Rd:28-30: Dropping empty section \details
prepare_Rd: glpls1a.logit.all.Rd:45: Dropping empty section \note
prepare_Rd: glpls1a.mlogit.Rd:27-29: Dropping empty section \details
prepare_Rd: glpls1a.mlogit.Rd:47: Dropping empty section \note
prepare_Rd: glpls1a.mlogit.cv.error.Rd:24: Dropping empty section \details
prepare_Rd: glpls1a.mlogit.cv.error.Rd:40: Dropping empty section \note
prepare_Rd: glpls1a.train.test.error.Rd:27-29: Dropping empty section \details
prepare_Rd: glpls1a.train.test.error.Rd:46: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'MASS'
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'MASS'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

gpls.Rcheck/00install.out:

* installing *source* package 'gpls' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'gpls.Rnw' 
** testing if installed package can be loaded

* DONE (gpls)

gpls.Rcheck/gpls-Ex.timings:

nameusersystemelapsed
glpls1a0.190.000.20
glpls1a.cv.error0.410.000.41
glpls1a.logit.all0.120.000.12
glpls1a.mlogit0.360.000.36
glpls1a.mlogit.cv.error7.130.007.14
glpls1a.train.test.error0.040.000.05
gpls0.240.000.31
predict.gpls0.210.020.28