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Package 202/462HostnameOS / ArchBUILDCHECKBUILD BIN
goProfiles 1.15.0
Alex Sanchez
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/goProfiles
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: goProfiles
Version: 1.15.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings goProfiles_1.15.0.tar.gz
StartedAt: 2011-05-09 12:44:06 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 12:45:39 -0700 (Mon, 09 May 2011)
EllapsedTime: 92.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: goProfiles.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/goProfiles.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goProfiles/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goProfiles’ version ‘1.15.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘goProfiles’ can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/goProfiles.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/goProfiles.Rcheck/00check.log’
for details

goProfiles.Rcheck/00install.out:

* installing *source* package ‘goProfiles’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘goProfiles.Rnw’ 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

* DONE (goProfiles)

goProfiles.Rcheck/goProfiles-Ex.timings:

nameusersystemelapsed
CD4ids0.0160.0000.016
GOTermsList000
basicProfile4.1360.0924.309
compSummary2.2520.0282.281
compareGOProfiles2.2640.0202.284
compareGeneLists 9.833 0.04810.093
compareProfilesLists000
contractedProfile0.8160.0080.828
conversionFunctions0.0360.0040.040
drosophila0.0000.0000.004
equivSummary000
equivalentGOProfiles1.9200.0081.931
expandedLevel1.8640.0201.961
expandedProfile0.4280.0000.445
fisherGOProfiles6.3040.0406.604
fitGOProfile0.0000.0000.001
hugoIds0.0160.0000.017
mergeProfilesLists4.6050.0204.643
ngenes0.8120.0040.819
omimIds0.0080.0000.007
plotProfiles4.4600.0324.494
printProfiles4.6280.0244.650
prostateIds0.0080.0000.005