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Package 201/462HostnameOS / ArchBUILDCHECKBUILD BIN
globaltest 5.7.2
Jelle Goeman
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/globaltest
Last Changed Rev: 55357 / Revision: 55359
Last Changed Date: 2011-05-09 06:43:13 -0700 (Mon, 09 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: globaltest
Version: 5.7.2
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch globaltest_5.7.2.tar.gz
StartedAt: 2011-05-09 14:58:35 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:01:47 -0700 (Mon, 09 May 2011)
EllapsedTime: 191.8 seconds
RetCode: 0
Status:  OK 
CheckDir: globaltest.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/globaltest.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘globaltest/DESCRIPTION’ ... OK
* this is package ‘globaltest’ version ‘5.7.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘globaltest’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘GlobalTest.pdf’ from 686Kb to 334Kb
     compacted ‘GlobalTest_deprecated.pdf’ from 333Kb to 178Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

globaltest.Rcheck/00install.out:

* installing *source* package ‘globaltest’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "sort" in "globaltest"
Creating a new generic function for "model.matrix" in "globaltest"
Creating a new generic function for "coefficients" in "globaltest"
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GlobalTest.Rnw’ 
   ‘GlobalTest_deprecated.Rnw’ 
** testing if installed package can be loaded

* DONE (globaltest)

globaltest.Rcheck/globaltest-Ex.timings:

nameusersystemelapsed
comparative4.6010.0224.690
diagnostics1.1670.0061.179
genesettesting0.0010.0000.000
goodnessoffit2.4370.0952.559
gt0.8490.0240.883
gt.object-class0.6480.0310.683
gtoptions0.0010.0000.001
mlogit0.0220.0010.028
multtest0.7310.0050.745
v4_checkerboard0.0930.0050.098
v4_geneplot0.6530.0110.667
v4_globaltest5.6280.2916.083
v4_multtest0.6590.0160.684
v4_permutations2.5380.1512.896
v4_regressionplot1.7080.0161.903
v4_sampleplot0.6400.0130.663
v4_sampling40.383 0.70241.638