Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 188/462HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 1.9.0
Chris Stubben
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genomes
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genomes
Version: 1.9.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings genomes_1.9.0.tar.gz
StartedAt: 2011-05-09 13:42:49 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 13:43:56 -0700 (Mon, 09 May 2011)
EllapsedTime: 67.6 seconds
RetCode: 0
Status:  OK  
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/genomes.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomes' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genomes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:

* installing *source* package 'genomes' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'genome-tables.Rnw' 
** testing if installed package can be loaded

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
acc2date0.200.002.48
doublingTime0.210.000.20
genomes-lines0.210.000.22
genomes-plot0.160.000.17
genomes-print0.130.000.13
genomes-subset0.120.000.12
genomes-summary0.020.000.02
genomes-update000
genomes0.210.000.20
genus0.250.000.25
image20.060.000.06
lenvs0.030.000.03
leuks0.120.000.13
like0.160.000.15
lproks0.310.000.32
plotby0.460.000.45
pub2date0.170.001.97
pubmed0.140.020.67
revhist 0.17 0.0012.25
species0.330.010.36
table20.010.000.02
taxid2names0.000.000.42
term2neighbor0.050.001.18
term2summary 1.94 0.0012.90
top0.280.000.28
virus0.090.000.90
year0.130.000.13