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Package 153/462HostnameOS / ArchBUILDCHECKBUILD BIN
flowMerge 2.1.0
Greg Finak
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowMerge
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: flowMerge
Version: 2.1.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowMerge_2.1.0.tar.gz
StartedAt: 2011-05-09 14:28:43 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 14:31:28 -0700 (Mon, 09 May 2011)
EllapsedTime: 164.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: flowMerge.Rcheck
Warnings: 1

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMerge.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowMerge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowMerge’ version ‘2.1.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flowMerge’ can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMerge.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘flowMerge.pdf’ from 644Kb to 185Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMerge.Rcheck/00check.log’
for details

flowMerge.Rcheck/00install.out:

* installing *source* package ‘flowMerge’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: mnormt
Loading required package: ellipse
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

Attaching package: ‘flowCore’

The following object(s) are masked from ‘package:stats’:

    alias, filter


Attaching package: ‘flowClust’

The following object(s) are masked from ‘package:mvtnorm’:

    dmvt

The following object(s) are masked from ‘package:graphics’:

    box


Attaching package: ‘snow’

The following object(s) are masked from ‘package:base’:

    enquote

Loading required package: iterators
Loading required package: codetools
Creating a new generic function for "merge" in "flowMerge"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘flowMerge.Rnw’ 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (flowMerge)

flowMerge.Rcheck/flowMerge-Ex.timings:

nameusersystemelapsed
NENT0.9110.3027.036
fitPiecewiseLinreg0.2890.1120.356
flowClust.res0.0470.0050.052
flowMerge-package0.4170.1290.513
flowObj0.2470.0990.341
map0.0060.0010.008
merge-methods0.3480.1190.454
merge0.2590.1020.341
pFlowMerge31.447 1.94534.692
plot-methods0.3820.1190.468
updateU0.2820.0870.369