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Package 297/462HostnameOS / ArchBUILDCHECKBUILD BIN
MotIV 1.7.0
Eloi Mercier , Raphael Gottardo
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MotIV
Last Changed Rev: 54811 / Revision: 55359
Last Changed Date: 2011-04-13 18:45:05 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MotIV
Version: 1.7.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --library=MotIV.buildbin-libdir MotIV_1.7.0.tar.gz
StartedAt: 2011-05-09 21:08:13 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 21:08:36 -0700 (Mon, 09 May 2011)
EllapsedTime: 22.5 seconds
RetCode: 0
Status:  OK  
PackageFile: MotIV_1.7.0.zip
PackageFileSize: 1.47 MiB

Command output

* installing *source* package 'MotIV' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c Alignment.cpp -o Alignment.o
Alignment.cpp: In member function 'virtual double SmithWatermanAffine::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:793:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double NeedlemanWunsch::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:592:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWaterman::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:244:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp:244:19: warning: 'revScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWatermanUngappedExtended::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:426:9: warning: 'forScore' may be used uninitialized in this function
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c ColumnComp.cpp -o ColumnComp.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c DeclareAll.cpp -o DeclareAll.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c Motif.cpp -o Motif.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c MotifDistances.cpp -o MotifDistances.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c MotifMatch.cpp -o MotifMatch.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c PlatformSupport.cpp -o PlatformSupport.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c RandPSSMGen.cpp -o RandPSSMGen.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -Ic:/Rtools212/GSL64/include         -O2 -Wall  -c generateScoresDB.cpp -o generateScoresDB.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o MotIV.dll tmp.def Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifDistances.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lws2_32 -Lc:/Rtools212/GSL64/lib -lgsl -lgslcblas -lm -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/MotIV.buildbin-libdir/MotIV/libs/x64
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MotIV"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'MotIV.Rnw' using 'latin1' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MotIV' as MotIV_1.7.0.zip

* DONE (MotIV)