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Package 287/462HostnameOS / ArchBUILDCHECKBUILD BIN
Mfuzz 2.11.0
Matthias Futschik
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Mfuzz
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Mfuzz
Version: 2.11.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Mfuzz_2.11.0.tar.gz
StartedAt: 2011-05-09 15:44:40 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:45:42 -0700 (Mon, 09 May 2011)
EllapsedTime: 61.9 seconds
RetCode: 0
Status:  OK 
CheckDir: Mfuzz.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/Mfuzz.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Mfuzz/DESCRIPTION’ ... OK
* this is package ‘Mfuzz’ version ‘2.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Mfuzz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Mfuzz.Rcheck/00install.out:

* installing *source* package ‘Mfuzz’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: class
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘Mfuzz.Rnw’ 
** testing if installed package can be loaded

* DONE (Mfuzz)

Mfuzz.Rcheck/Mfuzz-Ex.timings:

nameusersystemelapsed
acore0.0020.0000.003
cselection0.0060.0010.006
fill.NA0.0010.0000.001
filter.NA0.0010.0000.001
filter.std1.0310.0231.062
kmeans20.0020.0000.002
kmeans2.plot0.0020.0000.002
mfuzz0.0040.0000.004
mfuzz.plot0.0050.0000.004
mfuzz.plot20.0090.0010.010
mfuzzColorBar0.0010.0000.002
overlap0.0030.0000.004
overlap.plot0.0070.0000.008
partcoef0.0080.0010.008
randomise0.1630.0100.176
standardise0.0020.0000.002
standardise20.0020.0000.002
top.count0.0020.0000.003