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Package 253/462HostnameOS / ArchBUILDCHECKBUILD BIN
LMGene 2.9.0
Blythe Durbin-Johnson
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LMGene
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: LMGene
Version: 2.9.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings LMGene_2.9.0.tar.gz
StartedAt: 2011-05-09 13:03:17 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 13:05:37 -0700 (Mon, 09 May 2011)
EllapsedTime: 140.3 seconds
RetCode: 0
Status:  OK 
CheckDir: LMGene.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/LMGene.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LMGene/DESCRIPTION’ ... OK
* this is package ‘LMGene’ version ‘2.9.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘LMGene’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

LMGene.Rcheck/00install.out:

* installing *source* package ‘LMGene’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: splines
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘LMGene.Rnw’ 
** testing if installed package can be loaded

* DONE (LMGene)

LMGene.Rcheck/LMGene-Ex.timings:

nameusersystemelapsed
LMGene3.5240.0363.588
genediff3.5080.0003.624
glog0.0080.0000.008
lnorm0.1400.0040.146
lnormeS0.0880.0000.088
neweS0.0760.0000.075
norm0.0760.0000.076
plotMeanSD0.1360.0040.147
psmeans0.1640.0000.170
rowaov3.4760.0043.569
sample.eS0.0680.0040.072
sample.ind0.1560.0000.158
sample.mat0.0640.0080.073
tranest15.385 0.00815.394
tranestAffyProbeLevel75.837 0.65278.190
transeS0.0080.0000.010
vlist0.0000.0000.004