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Package 181/462HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 2.3.0
Martin Slawski
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneSelector
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneSelector
Version: 2.3.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings GeneSelector_2.3.0.tar.gz
StartedAt: 2011-05-09 13:39:34 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 13:40:37 -0700 (Mon, 09 May 2011)
EllapsedTime: 63.9 seconds
RetCode: 0
Status:  OK  
CheckDir: GeneSelector.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/GeneSelector.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneSelector/DESCRIPTION' ... OK
* this is package 'GeneSelector' version '2.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSelector' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GeneSelector.Rcheck/00install.out:

* installing *source* package 'GeneSelector' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:3:9: warning: 'tau' may be used uninitialized in this function
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c mcfour.c -o mcfour.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c mct.c -o mct.o
gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/GeneSelector.Rcheck/GeneSelector/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GeneSelector.rnw' 
** testing if installed package can be loaded

* DONE (GeneSelector)

GeneSelector.Rcheck/GeneSelector-Ex.timings:

nameusersystemelapsed
AggregateMC0.650.000.65
AggregatePenalty0.810.000.81
AggregateSVD0.330.000.36
AggregateSimple0.380.000.37
GeneSelector2.590.052.64
GenerateBootMatrix0.090.000.10
GenerateFoldMatrix0.080.000.08
GetStabilityDistance0.300.000.29
GetStabilityOverlap0.420.000.43
GetStabilityUnion0.390.000.39
HeatmapRankings2.710.042.76
MergeMethods2.200.042.24
RankingBaldiLong0.080.000.07
RankingEbam0.610.000.64
RankingFC0.020.000.02
RankingFoxDimmic0.040.000.04
RankingLimma0.830.000.83
RankingPermutation1.100.011.11
RankingSam1.730.021.75
RankingShrinkageT0.130.000.13
RankingSoftthresholdT0.20.00.2
RankingTstat0.010.000.01
RankingWelchT0.020.000.02
RankingWilcEbam0.340.000.34
RankingWilcoxon0.20.00.2
RepeatRanking1.940.001.95
toydata0.010.000.02