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Package 73/462HostnameOS / ArchBUILDCHECKBUILD BIN
BUS 1.9.0
Yuanhua Liu
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BUS
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: BUS
Version: 1.9.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings BUS_1.9.0.tar.gz
StartedAt: 2011-05-09 11:49:01 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 11:49:21 -0700 (Mon, 09 May 2011)
EllapsedTime: 19.8 seconds
RetCode: 0
Status:  OK 
CheckDir: BUS.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/BUS.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BUS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BUS’ version ‘1.9.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BUS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gene.pvalue: multiple local function definitions for ‘fi’ with
  different formal arguments
gene.trait.pvalue: multiple local function definitions for ‘fi’ with
  different formal arguments
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BUS.Rcheck/00install.out:

* installing *source* package ‘BUS’ ...
** libs
g++ -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c BUS.cpp -o BUS.o
g++ -shared -L/usr/local/lib64 -o BUS.so BUS.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/BUS.Rcheck/BUS/libs
** R
** data
** inst
** preparing package for lazy loading
Loading required package: infotheo
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘bus.rnw’ 
** testing if installed package can be loaded

* DONE (BUS)

BUS.Rcheck/BUS-Ex.timings:

nameusersystemelapsed
BUS0.080.000.08
gene.pvalue1.9160.0121.927
gene.similarity0.0120.0000.009
gene.trait.pvalue1.6960.0121.711
gene.trait.similarity0.0280.0000.032
pred.network2.3840.0122.422
tumors.mRNA0.0280.0000.029
tumors.miRNA0.0000.0000.004