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hmyriB36 0.99.11
Vincent Carey
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hmyriB36
Last Changed Rev: 1750 / Revision: 1763
Last Changed Date: 2011-10-09 19:48:53 -0700 (Sun, 09 Oct 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ WARNINGS ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: hmyriB36
Version: 0.99.11
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings hmyriB36_0.99.11.tar.gz
StartedAt: 2011-10-19 01:09:24 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:11:35 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 130.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hmyriB36.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/hmyriB36.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hmyriB36/DESCRIPTION’ ... OK
* this is package ‘hmyriB36’ version ‘0.99.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘hmyriB36’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 79.9Mb
  sub-directories of 1Mb or more:
    parts  58.7Mb
    data   21.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object '/loc/home/biocbuild/bbs-2.8-data-experiment/meat/hmyriB36.Rcheck/00_pkg_src/hmyriB36/man/hmyriB36-pkg.Rd':
  ‘[GGBase]{getSS}’

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/hmyriB36.Rcheck/00check.log’
for details

hmyriB36.Rcheck/00install.out:

* installing *source* package ‘hmyriB36’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
To get a tailored smlSet, use getSS("hmyriB36", [chrvec]) 
available chromosomes are named  1, 10, ..., X, Y 

* DONE (hmyriB36)

hmyriB36.Rcheck/hmyriB36-Ex.timings:

nameusersystemelapsed
hmyriB36-pkg19.105 0.38419.596