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dyebiasexamples 1.0.6
Philip Lijnzaad
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/dyebiasexamples
Last Changed Rev: 1102 / Revision: 1763
Last Changed Date: 2009-12-09 04:12:52 -0800 (Wed, 09 Dec 2009)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: dyebiasexamples
Version: 1.0.6
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch dyebiasexamples_1.0.6.tar.gz
StartedAt: 2011-10-19 01:15:15 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:18:59 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 223.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: dyebiasexamples.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/dyebiasexamples.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'dyebiasexamples/DESCRIPTION' ... OK
* this is package 'dyebiasexamples' version '1.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'dyebiasexamples' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 40.3Mb
  sub-directories of 1Mb or more:
    data        5.3Mb
    extradata  34.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  README
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-data-experiment/meat/dyebiasexamples.Rcheck/00check.log'
for details

dyebiasexamples.Rcheck/00install.out:

* installing *source* package 'dyebiasexamples' ...
** R
** data
** inst
** preparing package for lazy loading
Setting options('download.file.method.GEOquery'='curl')
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Setting options('download.file.method.GEOquery'='curl')

* DONE (dyebiasexamples)

dyebiasexamples.Rcheck/dyebiasexamples-Ex.timings:

nameusersystemelapsed
data.raw1.6870.0511.778
dyebias.geo2marray0.0010.0000.000
dyebias.umcu.proper.estimators5.0470.2805.456