Package: dyebiasexamples

Version: 1.0.6

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings dyebiasexamples_1.0.6.tar.gz

StartedAt: 2011-10-19 00:56:36 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 00:57:31 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 55.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: dyebiasexamples.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/dyebiasexamples.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dyebiasexamples/DESCRIPTION’ ... OK
* this is package ‘dyebiasexamples’ version ‘1.0.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘dyebiasexamples’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 40.3Mb
  sub-directories of 1Mb or more:
    extradata  34.8Mb
    data        5.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  README
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/dyebiasexamples.Rcheck/00check.log’
for details

* installing *source* package ‘dyebiasexamples’ ...
** R
** data
** inst
** preparing package for lazy loading
Setting options('download.file.method.GEOquery'='curl')
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Setting options('download.file.method.GEOquery'='curl')

* DONE (dyebiasexamples)

name	user	system	elapsed
data.raw	1.332	0.012	1.357
dyebias.geo2marray	0	0	0
dyebias.umcu.proper.estimators	3.772	0.044	3.843