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davidTiling 1.2.12
Wolfgang Huber
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/davidTiling
Last Changed Rev: 1042 / Revision: 1763
Last Changed Date: 2009-10-13 18:35:32 -0700 (Tue, 13 Oct 2009)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ WARNINGS ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: davidTiling
Version: 1.2.12
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings davidTiling_1.2.12.tar.gz
StartedAt: 2011-10-19 00:52:06 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 00:56:36 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 270.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: davidTiling.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/davidTiling.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘davidTiling/DESCRIPTION’ ... OK
* this is package ‘davidTiling’ version ‘1.2.12’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘davidTiling’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 538.1Mb
  sub-directories of 1Mb or more:
    website     2.3Mb
    celfiles  305.9Mb
    data      229.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOHyperG: no visible global function definition for
  ‘replaceSystematicByCommonName’
scoreSegments: no visible binding for global variable ‘yeastFeatures’
scoreSegments: no visible binding for global variable ‘chrs’
* checking Rd files ... NOTE
prepare_Rd: GOHyperG.Rd:34-35: Dropping empty section \examples
prepare_Rd: getGO.Rd:32-33: Dropping empty section \examples
prepare_Rd: scatterWithHist.Rd:19-20: Dropping empty section \details
prepare_Rd: scoreSegments.Rd:103-104: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/davidTiling.Rcheck/00check.log’
for details

davidTiling.Rcheck/00install.out:

* installing *source* package ‘davidTiling’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (davidTiling)

davidTiling.Rcheck/davidTiling-Ex.timings:

nameusersystemelapsed
davidTiling73.128 0.92474.056
getAttributeField0.0000.0000.001
gff0.1400.0080.168
probeAnno20.886 0.56422.072
scatterWithHist0.0080.0000.008
showDens0.0080.0000.007
yeastFeatures0.0040.0000.016