Package: XhybCasneuf

Version: 1.0.6

Command: chmod a+r XhybCasneuf -R && D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data XhybCasneuf

StartedAt: 2011-10-19 01:43:42 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 01:44:07 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 24.8 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'XhybCasneuf/DESCRIPTION' ... OK
* preparing 'XhybCasneuf':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to remove the existing 'INDEX'
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: ath1121501cdf
Loading required package: tinesath1cdf

Attaching package: 'tinesath1cdf'

The following object(s) are masked from 'package:ath1121501cdf':

    i2xy, xy2i

Loading required package: RColorBrewer
Loading required package: grid
Plot background-corrected, normalised expression data of reporters:  
   - of probe set  A  -> plot  A 
   - of probe set  B  -> plot  B 
   - of probe set  C  -> plot  C 
Plot median-polish summarised expression data of the three probe sets -> plot D


***  Pearson correlation coefficients between expression values summarised with:
*** median polish ***
corr.: probe sets A and B:  -0.0692 
corr.: probe sets A and C:  0.731 

*** tuckey's biweight ***
corr.: probe sets A and B:  -0.223 
corr.: probe sets A and C:  -0.19 

*** dChip ***
corr.: probe sets A and B:  0.296 
corr.: probe sets A and C:  0.947 

pdflatex Xhyb
This is pdfTeX, Version 3.1415926-1.40.11 (MiKTeX 2.9)
entering extended mode

(D:\biocbld\bbs-2.8-data-experiment\tmpdir\RtmpnRxzsy\Rbuild57464f9\XhybCasneuf
\inst\doc\Xhyb.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, afrikaans, ancientgreek, ar
abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic, 
croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga
lician, german, german-x-2009-06-19, greek, gujarati, hindi, hungarian, iceland
ic, indonesian, interlingua, irish, italian, kannada, kurmanji, lao, latin, lat
vian, lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerm
an, ngerman-x-2009-06-19, nynorsk, oriya, panjabi, pinyin, polish, portuguese, 
romanian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swis
sgerman, tamil, telugu, turkish, turkmen, ukenglish, ukrainian, uppersorbian, u
senglishmax, welsh, loaded.
pdflatex.exe: Windows API error 5: Access is denied.
pdflatex.exe: Data: cprogramdatamiktex2.9miktexdatale1756f6ade37d5f870f23c05a7f81e257.fndb
make: *** [Xhyb.pdf] Error 1
Error in tools::buildVignettes(dir = ".") : running 'make' failed
Execution halted