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PREDAsampledata 0.2.2
Francesco Ferrari
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/PREDAsampledata
Last Changed Rev: 1768 / Revision: 1769
Last Changed Date: 2011-10-18 16:16:16 -0700 (Tue, 18 Oct 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ ERROR ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  ERROR  OK 

Summary

Package: PREDAsampledata
Version: 0.2.2
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings PREDAsampledata_0.2.2.tar.gz
StartedAt: 2011-10-19 01:16:04 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:17:22 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 77.9 seconds
RetCode: 1
Status:  ERROR 
CheckDir: PREDAsampledata.Rcheck
Warnings: NA

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/PREDAsampledata.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK
* this is package ‘PREDAsampledata’ version ‘0.2.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘PREDAsampledata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 116.5Mb
  sub-directories of 1Mb or more:
    sampledata  20.7Mb
    data        95.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package "PREDA"
  Calls: <Anonymous> ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘PREDAsampledata-Ex.R’ failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GEanalysisResults
> ### Title: RCC gene expression sample dataset - PREDA analysis results
> ### Aliases: GEanalysisResults
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(GEanalysisResults)
> str(GEanalysisResults)
Loading required package: PREDA
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'PREDA'
Error in .requirePackage(package) : 
  unable to find required package "PREDA"
Calls: str ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted

PREDAsampledata.Rcheck/00install.out:

* installing *source* package ‘PREDAsampledata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (PREDAsampledata)

PREDAsampledata.Rcheck/PREDAsampledata-Ex.timings:

nameusersystemelapsed
AffybatchRCC12.452 0.29212.816
ExpressionSetRCC0.4720.0200.490