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Package 271/467HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.30.0
Yee Hwa (Jean) Yang
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/marray
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: marray
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch marray_1.30.0.tar.gz
StartedAt: 2011-10-20 15:51:23 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:53:43 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 139.7 seconds
RetCode: 0
Status:  OK 
CheckDir: marray.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/marray.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'marray/DESCRIPTION' ... OK
* this is package 'marray' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'marray' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.3Mb
  sub-directories of 1Mb or more:
    doc         5.8Mb
    swirldata   5.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable 'gnames'
findID: no visible global function definition for 'phenoData'
htmlPage: no visible binding for global variable 'Gnames'
maTwoSamples: no visible global function definition for 'gpTools'
scale.na: no visible global function definition for 'applyy'
widget.TwoSamples: no visible global function definition for
  'widgetRender'
widget.mapGeneInfo: no visible global function definition for
  'widgetRender'
* checking Rd files ... NOTE
prepare_Rd: cbind.Rd:35-36: Dropping empty section \value
prepare_Rd: cbind.Rd:41-42: Dropping empty section \examples
prepare_Rd: maCompLayout.Rd:19-21: Dropping empty section \details
prepare_Rd: read.marrayInfo.Rd:30-32: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:35: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:42: Dropping empty section \note
prepare_Rd: read.marrayRaw.Rd:73-75: Dropping empty section \details
prepare_Rd: showLargeObject.Rd:26-27: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'marrayNorm.pdf' from 1539Kb to 346Kb
     compacted 'marrayPlots.pdf' from 3046Kb to 448Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

marray.Rcheck/00install.out:

* installing *source* package 'marray' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (marray)

marray.Rcheck/marray-Ex.timings:

nameusersystemelapsed
boxplot0.8230.2041.046
checkTargetInfo0.1900.0340.225
dim0.0030.0000.003
findID0.1650.0240.191
htmlPage0.1620.0450.210
image0.0890.0040.094
ma2D0.0000.0010.000
maBoxplot0.0000.0000.001
maColorBar0.0190.0010.020
maCompCoord0.0010.0010.002
maCompInd0.0060.0020.007
maCompLayout0.0110.0000.012
maCompNormA000
maCompPlate0.0150.0040.019
maCoord2Ind0.0050.0010.006
maDefaultPar0.0000.0010.001
maDotsDefaults0.0020.0000.002
maDotsMatch0.0020.0000.002
maGenControls0.3320.0200.353
maGeneTable0.1120.0160.132
maImage1.4560.3791.895
maImage.func000
maInd2Coord0.0060.0020.008
maLegendLines0.0000.0010.000
maLoess0.0000.0000.001
maLoessLines000
maMAD0.0000.0000.001
maMed0.0010.0000.000
maNorm4.0490.3224.425
maNorm2D000
maNormLoess000
maNormMAD000
maNormMain27.010 1.17128.434
maNormMed0.0000.0000.001
maNormScale0.5660.2430.822
maNum2Logic0.0000.0000.001
maPalette0.0100.0010.010
maPlot4.2220.4074.680
maPlot.func000
maSelectGnames0.0140.0000.016
maText000
maTop0.0000.0000.001
mapGeneInfo0.0010.0010.001
marrayInfo-class0.0000.0000.001
marrayLayout-class0.0010.0000.000
marrayNorm-class0.5440.2190.781
marrayRaw-class0.2970.0640.364
opVersionID0.0010.0000.002
plotMA3.8450.2794.181
read.Galfile0.0870.0240.112
read.marrayInfo0.1050.0110.115
read.marrayLayout0.1920.0210.218
read.marrayRaw3.5560.2663.851
rm.na0.0000.0010.000
stat.confband.text1.0970.0901.193
stat.gnames0.6250.0670.699
write.list0.2150.0680.287
write.marray0.1690.0240.196
write.xls0.1450.0360.187