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Package 208/467HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.30.0
Seth Falcon
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/graph
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: graph
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch graph_1.30.0.tar.gz
StartedAt: 2011-10-20 15:23:02 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:24:36 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 93.8 seconds
RetCode: 0
Status:  OK 
CheckDir: graph.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/graph.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:

* installing *source* package 'graph' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-2.8-bioc/meat/graph.Rcheck/graph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0650.0000.066
IMCA0.4000.0120.415
MAPKsig0.2340.0110.288
MultiGraph-class0.1590.0040.165
acc-methods0.0260.0010.027
addEdge0.0190.0000.019
addNode0.0200.0010.020
adj-methods0.0090.0010.010
apoptosisGraph0.0710.0030.074
attrData-class0.0020.0000.002
aveNumEdges0.0210.0010.021
biocRepos0.0030.0010.004
boundary0.0130.0000.013
buildRepDepGraph0.0000.0010.001
calcProb000
calcSumProb0.0130.0000.013
clearNode0.0130.0000.013
clusterGraph-class0.0070.0000.009
clusteringCoefficient-methods0.0180.0010.018
combineNodes0.0740.0010.085
distGraph-class0.0010.0000.002
duplicatedEdges0.0010.0000.000
edgeMatrix0.0290.0010.030
edgeSets0.0570.0040.060
edgeWeights0.0170.0010.018
fromGXL-methods0.7030.0140.734
graph-class0.0140.0010.015
graph2SparseM0.3580.0130.378
graphAM-class0.0210.0000.021
graphBAM-class0.1130.0020.115
graphExamples0.0100.0010.011
graphNEL-class0.0090.0010.009
inEdges0.0060.0010.006
leaves0.0890.0020.092
listEdges0.0190.0010.020
matrix2Graph0.0540.0050.062
mostEdges0.0400.0020.043
numNoEdges0.0160.0010.017
pancrCaIni0.1540.0050.160
randomEGraph0.0150.0000.015
randomGraph0.0110.0000.012
randomNodeGraph0.0120.0000.012
removeEdge0.0160.0000.016
removeNode0.0070.0000.007
renderInfo-class0.0170.0010.017
reverseEdgeDirections0.0090.0000.010
simpleEdge-class0.0020.0000.002
standardLabeling0.0840.0100.095
subGraph0.0020.0000.003
toDotR-methods0.0490.0050.063
ugraph0.0160.0000.016
validGraph0.0070.0000.008