Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 198/467HostnameOS / ArchBUILDCHECKBUILD BIN
girafe 1.4.0
J. Toedling
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/girafe
Last Changed Rev: 54808 / Revision: 59457
Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: girafe
Version: 1.4.0
Command: chmod a+r girafe -R && D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data girafe
StartedAt: 2011-10-20 11:53:54 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 11:54:57 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 62.6 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'girafe/DESCRIPTION' ... OK
* preparing 'girafe':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: Rsamtools
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: ShortRead
Loading required package: lattice
Loading required package: intervals

Attaching package: 'intervals'

The following object(s) are masked from 'package:Biostrings':

    type

The following object(s) are masked from 'package:IRanges':

    reduce

Loading required package: genomeIntervals

Attaching package: 'genomeIntervals'

The following object(s) are masked from 'package:GenomicRanges':

    strand, strand<-

Loading required package: grid
Loading required package: org.Mm.eg.db
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:IRanges':

    updateObject

Loading required package: DBI

pdflatex girafe
This is pdfTeX, Version 3.1415926-1.40.11 (MiKTeX 2.9)
entering extended mode

(D:\biocbld\bbs-2.8-bioc\tmpdir\RtmpmBv9x6\Rbuild21857167\girafe\inst\doc\giraf
e.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, afrikaans, ancientgreek, ar
abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic, 
croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga
lician, german, german-x-2009-06-19, greek, gujarati, hindi, hungarian, iceland
ic, indonesian, interlingua, irish, italian, kannada, kurmanji, lao, latin, lat
vian, lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerm
an, ngerman-x-2009-06-19, nynorsk, oriya, panjabi, pinyin, polish, portuguese, 
romanian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swis
sgerman, tamil, telugu, turkish, turkmen, ukenglish, ukrainian, uppersorbian, u
senglishmax, welsh, loaded.
pdflatex.exe: Windows API error 5: Access is denied.
pdflatex.exe: Data: cprogramdatamiktex2.9miktexdatale1756f6ade37d5f870f23c05a7f81e257.fndb
make: *** [pdf] Error 1
Error in tools::buildVignettes(dir = ".") : running 'make' failed
Execution halted