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Package 136/467HostnameOS / ArchBUILDCHECKBUILD BIN
eisa 1.4.1
Gabor Csardi
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/eisa
Last Changed Rev: 54845 / Revision: 59457
Last Changed Date: 2011-04-14 12:29:41 -0700 (Thu, 14 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: eisa
Version: 1.4.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings eisa_1.4.1.tar.gz
StartedAt: 2011-10-20 12:31:41 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:35:53 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 251.9 seconds
RetCode: 0
Status:  OK 
CheckDir: eisa.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/eisa.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘eisa/DESCRIPTION’ ... OK
* this is package ‘eisa’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘eisa’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annotate: no visible binding for global variable ‘ALL’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' calls not declared from:
  org.Hs.eg.db targetscan.Hs.eg.db
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  affy targetscan.Hs.eg.db
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

eisa.Rcheck/00install.out:

* installing *source* package ‘eisa’ ...
** R
** data
** inst
** preparing package for lazy loading
in method for ‘coerce’ with signature ‘"Biclust","ISAModules"’: no definition for class "Biclust"
in method for ‘coerce’ with signature ‘"ISAModules","Biclust"’: no definition for class "Biclust"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (eisa)

eisa.Rcheck/eisa-Ex.timings:

nameusersystemelapsed
ALLModules0.0400.0000.045
ISA.CHR2.0080.0362.050
ISA.GO6.6200.1288.363
ISA.KEGG2.7280.0482.860
ISA32.675 0.17233.174
ISA.html17.80 0.2618.57
ISA.iterate8.00.18.1
ISA.miRNA0.0120.0000.012
ISA.normalize5.8560.0965.952
ISA.sweep13.757 0.05213.824
ISA.unique7.220.127.42
ISA2heatmap1.4680.0241.497
ISAExpressionSet6.0000.0486.053
ISAModules-class0.0160.0000.017
ListHyperGParams-class4.3170.0444.390
ListHyperGResult-class4.9840.0565.046
cond.plot2.4320.0322.463
eisa.biclust4.730.184.91
enrichment0.6280.0080.638
exp.plot2.4800.0642.549
gograph5.5770.0725.650
mnplot2.4520.0442.497
overlap0.650.501.14
profilePlot1.5040.0441.618
robustness3.330.023.41