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Package 92/467HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.2.0
Stephen Nyangoma
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/clippda
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.2.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch clippda_1.2.0.tar.gz
StartedAt: 2011-10-20 14:38:21 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:45:05 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 403.5 seconds
RetCode: 0
Status:  OK  
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/clippda.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.120.000.12
aclinicalProteomicsData-methods0.380.070.46
betweensampleVariance4.680.044.72
checkNo.replicates0.290.000.28
clippda-package150.23 1.51153.01
fisherInformation0.140.000.14
liverRawData0.030.000.03
liver_pheno000
liverdata7.560.027.61
mostSimilarTwo000
negativeIntensitiesCorrection2.660.012.69
phenoDataFrame0.170.000.18
pheno_urine0.020.000.02
preProcRepeatedPeakData6.610.026.66
proteomicsExprsData0.360.000.36
proteomicspData0.140.000.14
replicateCorrelations9.000.009.03
sampleClusteredData2.620.002.66
sampleSize91.33 0.5292.68
sampleSize3DscatterPlots0.080.000.08
sampleSizeContourPlots0.060.000.08
sampleSizeParameters46.27 0.0846.67
sample_technicalVariance11.43 0.0111.51
spectrumFilter6.370.006.39