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Package 273/467HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.4.0
Reid F. Thompson
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/MassArray
Last Changed Rev: 56142 / Revision: 59457
Last Changed Date: 2011-06-13 11:59:45 -0700 (Mon, 13 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: MassArray
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MassArray_1.4.0.tar.gz
StartedAt: 2011-10-20 15:53:41 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:55:15 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 93.3 seconds
RetCode: 0
Status:  OK 
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/MassArray.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'MassArray.pdf' from 352Kb to 192Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.0230.0030.027
MassArrayData-class0.0010.0010.002
MassArrayFragment-class0.0010.0010.001
MassArrayPeak-class0.0010.0000.001
MassArraySpectrum-class0.0010.0010.001
ampliconPrediction3.0640.0173.099
analyzeCpGs0.3020.0030.313
bisConvert0.0010.0000.001
calcMW0.0020.0000.002
calcMeth0.0200.0010.022
calcPercentAdduct0.0990.0020.104
calcPercentConversion0.0650.0020.072
combine5.6230.0295.696
convControl0.0390.0030.041
countCGs000
createWiggle0.0180.0030.021
estimatePrimerDimer0.1220.0050.127
evaluateSNPs39.183 0.09439.447
expandSequence0.0010.0000.001
findCollisions0.0010.0000.000
findFragments0.0240.0020.028
findPeaks0.0010.0000.001
identifySNPs0.0400.0010.041
inSilicoFragmentation0.0140.0010.016
isAssayable0.0010.0010.000
numCollisions0.0010.0000.000
plot.MassArrayData0.0590.0020.061
position0.0230.0020.025
revComplement000
rnaDigest0.0110.0020.014
samples0.0340.0010.035
sum.MassArraySpectrum0.8640.0050.895