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Package 273/467HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.4.0
Reid F. Thompson
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/MassArray
Last Changed Rev: 56142 / Revision: 59457
Last Changed Date: 2011-06-13 11:59:45 -0700 (Mon, 13 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MassArray
Version: 1.4.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings MassArray_1.4.0.tar.gz
StartedAt: 2011-10-20 13:26:26 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:27:35 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 68.5 seconds
RetCode: 0
Status:  OK 
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/MassArray.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MassArray/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MassArray’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘MassArray’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* installing *source* package ‘MassArray’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.0120.0080.018
MassArrayData-class0.0000.0000.002
MassArrayFragment-class0.0000.0000.001
MassArrayPeak-class0.0000.0000.001
MassArraySpectrum-class0.0000.0000.001
ampliconPrediction2.7240.0082.740
analyzeCpGs0.2560.0000.281
bisConvert000
calcMW0.0040.0000.003
calcMeth0.0120.0000.013
calcPercentAdduct0.0720.0000.076
calcPercentConversion0.0560.0000.062
combine6.7960.0086.908
convControl0.0280.0000.028
countCGs000
createWiggle0.0120.0000.012
estimatePrimerDimer0.0720.0040.078
evaluateSNPs28.406 0.01229.591
expandSequence0.0000.0000.001
findCollisions000
findFragments0.0160.0000.027
findPeaks000
identifySNPs0.0320.0000.030
inSilicoFragmentation0.0120.0000.013
isAssayable000
numCollisions000
plot.MassArrayData0.0400.0040.042
position0.0200.0000.022
revComplement0.0000.0000.001
rnaDigest0.0080.0000.007
samples0.0440.0000.043
sum.MassArraySpectrum0.7960.0000.848