Back to the "Multiple platform build/check report" A  B  C  D  E  F  G [H] I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 224/467HostnameOS / ArchBUILDCHECKBUILD BIN
HTSanalyzeR 2.5.1
Xin Wang
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/HTSanalyzeR
Last Changed Rev: 56083 / Revision: 59457
Last Changed Date: 2011-06-09 08:59:03 -0700 (Thu, 09 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: HTSanalyzeR
Version: 2.5.1
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch HTSanalyzeR_2.5.1.tar.gz
StartedAt: 2011-10-20 15:30:50 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:34:07 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 196.8 seconds
RetCode: 0
Status:  OK  
CheckDir: HTSanalyzeR.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/HTSanalyzeR.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HTSanalyzeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTSanalyzeR' version '2.5.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTSanalyzeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOGeneSets: no visible binding for global variable 'org.Rn.egGo2EG'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

HTSanalyzeR.Rcheck/00install.out:

* installing *source* package 'HTSanalyzeR' ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (HTSanalyzeR)

HTSanalyzeR.Rcheck/HTSanalyzeR-Ex.timings:

nameusersystemelapsed
FDRcollectionGsea1.090.021.11
GOGeneSets1.980.092.68
GSCA-class000
HTSanalyzeR4cellHTS2000
KeggGeneSets3.650.083.85
NWA-class000
aggregatePvals000
analyze000
analyzeGeneSetCollections000
annotationConvertor0.860.000.96
appendGSTerms000
biogridDataDownload000
celAnnotationConvertor1.160.051.31
cellHTS2OutputStatTests000
collectionGsea0.520.000.52
data-KcViab0.810.040.87
drosoAnnotationConvertor0.730.000.75
duplicateRemover000
getTopGeneSets000
gseaPlots000
gseaScores0.020.000.02
hyperGeoTest3.030.023.04
interactome000
mammalAnnotationConvertor2.340.002.39
multiHyperGeoTest0.020.000.02
networkAnalysis000
networkPlot000
pairwiseGsea1.070.031.11
pairwiseGseaPlot000
pairwisePhenoMannWhit0.020.000.01
permutationPvalueCollectionGsea0.630.000.63
plotEnrichMap000
plotGSEA0.000.000.01
plotSubNet000
preprocess000
report000
reportAll000
summarize000
viewEnrichMap000
viewGSEA000
viewSubNet000
writeReportHTSA000