Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 186/467HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.12.0
Steffen Durinck
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GenomeGraphs
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: GenomeGraphs
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GenomeGraphs_1.12.0.tar.gz
StartedAt: 2011-10-20 15:06:33 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:08:38 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 124.7 seconds
RetCode: 0
Status:  OK 
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'GenomeGraphs.pdf' from 3184Kb to 532Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class0.0010.0000.002
BaseTrack-class0.0000.0000.001
DisplayPars-class0.0020.0000.002
DisplayPars0.5310.0264.403
ExonArray-class0.0030.0000.003
Gene-class0.0010.0000.000
GeneModel-class0.1540.0060.163
GeneRegion-class0.0010.0000.001
GenericArray-class0.0000.0000.001
GenomeAxis-class0.0010.0000.000
HighlightRegion-class0.0020.0000.002
Ideogram-class0.0010.0010.001
ImplementsTrackOverlay-class0.0010.0000.001
Legend-class0.0000.0010.001
MappedRead-class000
Overlay-class0.0010.0000.001
RectangleOverlay-class0.0010.0010.002
Segmentation-class0.0010.0000.001
Smoothing-class0.0000.0010.001
TextOverlay-class0.0010.0000.001
Title-class0.0010.0010.001
TrackOverlay-class0.0010.0000.001
Transcript-class0.0000.0010.000
TranscriptRegion-class0.0010.0000.001
cn0.0010.0000.000
exonProbePos0.0000.0000.001
gdObject-class0.0020.0000.002
gdPlot 2.520 0.03258.847
getPar0.0030.0000.003
getSize000
ideogramTab0.0030.0010.004
intensity000
makeAnnotationTrack0.040.000.04
makeBaseTrack0.0020.0010.001
makeExonArray0.0010.0000.001
makeGene0.0010.0010.001
makeGeneModel000
makeGeneRegion0.0010.0010.002
makeGenericArray0.0010.0000.001
makeGenomeAxis0.0000.0010.001
makeIdeogram0.0010.0000.001
makeLegend0.0000.0010.001
makeRectangleOverlay0.1320.0030.135
makeSegmentation0.1070.0030.111
makeSmoothing0.1540.0030.158
makeTextOverlay0.1190.0020.122
makeTitle0.0010.0000.001
makeTranscript0.0000.0000.001
probestart0.0000.0000.001
segEnd000
segStart0.0000.0000.001
segments000
seqDataEx0.0440.0020.046
setPar0.0170.0000.018
showDisplayOptions0.0020.0000.002
unrData000
unrNProbes0.0000.0000.001
unrPositions000
yeastCons1000