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Package 180/467HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 2.2.0
Martin Slawski
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GeneSelector
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: GeneSelector
Version: 2.2.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GeneSelector_2.2.0.tar.gz
StartedAt: 2011-10-20 15:03:03 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:04:29 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 86.9 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneSelector.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GeneSelector.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GeneSelector/DESCRIPTION' ... OK
* this is package 'GeneSelector' version '2.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSelector' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'GeneSelector.pdf' from 533Kb to 337Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GeneSelector.Rcheck/00install.out:

* installing *source* package 'GeneSelector' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:3: warning: 'tau' may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c mcfour.c -o mcfour.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c mct.c -o mct.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneSelector.so kendall.o mcfour.o mct.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/GeneSelector.Rcheck/GeneSelector/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneSelector)

GeneSelector.Rcheck/GeneSelector-Ex.timings:

nameusersystemelapsed
AggregateMC0.7650.1280.902
AggregatePenalty1.1430.1071.256
AggregateSVD0.4600.1370.603
AggregateSimple0.4510.1200.575
GeneSelector4.0660.5874.774
GenerateBootMatrix0.1370.0020.139
GenerateFoldMatrix0.1030.0030.106
GetStabilityDistance0.4100.1150.556
GetStabilityOverlap0.4110.1200.534
GetStabilityUnion0.5360.1520.694
HeatmapRankings3.6760.4924.362
MergeMethods3.5860.5404.304
RankingBaldiLong0.1170.0100.131
RankingEbam1.0010.2671.299
RankingFC0.0320.0050.038
RankingFoxDimmic0.0750.0080.083
RankingLimma1.3190.0291.357
RankingPermutation1.4560.0101.488
RankingSam2.8200.4543.304
RankingShrinkageT0.2590.0130.272
RankingSoftthresholdT0.4410.0190.462
RankingTstat0.0350.0060.040
RankingWelchT0.0350.0060.041
RankingWilcEbam0.4530.0150.477
RankingWilcoxon0.3140.0080.331
RepeatRanking2.2260.4442.690
toydata0.0270.0020.029