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Package 9/467HostnameOS / ArchBUILDCHECKBUILD BIN
ACME 2.8.0
Sean Davis
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/ACME
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ACME
Version: 2.8.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ACME_2.8.0.tar.gz
StartedAt: 2011-10-20 13:45:04 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:46:29 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 84.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ACME.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/ACME.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ACME/DESCRIPTION' ... OK
* this is package 'ACME' version '2.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ACME' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 33.3Mb
  sub-directories of 1Mb or more:
    data      4.5Mb
    doc       1.3Mb
    extdata  27.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findClosestGene: no visible binding for global variable 'refflat'
findClosestGene: no visible binding for '<<-' assignment to 'refflat'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ACME.Rcheck/00install.out:

* installing *source* package 'ACME' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:4: warning: suggest parentheses around comparison in operand of '&'
windowChisq.c:63:4: warning: suggest parentheses around comparison in operand of '&'
windowChisq.c:21:11: warning: unused variable 'xa'
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/ACME.Rcheck/ACME/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "print" in "ACME"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ACME)

ACME.Rcheck/ACME-Ex.timings:

nameusersystemelapsed
ACMECalcSet-class6.390.146.54
ACMESet-class0.650.020.67
aGFF-class0.640.010.66
aGFFCalc-class4.170.214.44
do.aGFF.calc4.070.064.25
example.agff0.650.010.69
findClosestGene1.880.073.65
findRegions6.510.066.67
generics0.630.010.64
getRefflat1.860.043.44
read.resultsGFF7.970.048.13
write.sgr3.760.073.87