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Package 246/436HostnameOS / ArchBUILDCHECKBUILD BIN
makecdfenv 1.29.1
James W. MacDonald
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/makecdfenv
Last Changed Rev: 50736 / Revision: 53255
Last Changed Date: 2010-11-06 21:48:33 -0700 (Sat, 06 Nov 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: makecdfenv
Version: 1.29.1
Command: /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.29.1.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R makecdfenv.buildbin-libdir
StartedAt: 2011-02-24 22:07:19 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 22:07:32 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 13.1 seconds
RetCode: 0
Status:  OK 
PackageFile: makecdfenv_1.29.1.tgz
PackageFileSize: 3.132 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=makecdfenv.buildbin-libdir makecdfenv_1.29.1.tar.gz'
>>>>>>> 

* installing *source* package ‘makecdfenv’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c read_cdffile.c -o read_cdffile.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs/i386/makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/i386/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/i386/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/i386/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/i386/makecdfenv.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=makecdfenv.buildbin-libdir --libs-only makecdfenv_1.29.1.tar.gz'
>>>>>>> 

* installing *source* package ‘makecdfenv’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c read_cdffile.c -o read_cdffile.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs/ppc

* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs/ppc/makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/ppc/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/ppc/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/ppc/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/ppc/makecdfenv.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=makecdfenv.buildbin-libdir --libs-only makecdfenv_1.29.1.tar.gz'
>>>>>>> 

* installing *source* package ‘makecdfenv’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c read_cdffile.c -o read_cdffile.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs/x86_64

* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs/x86_64/makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/x86_64/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/x86_64/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/x86_64/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/x86_64/makecdfenv.so"