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Package 245/436HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.15.0
Gustavo H. Esteves
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/maigesPack
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  ERROR  OK 

Summary

Package: maigesPack
Version: 1.15.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings maigesPack_1.15.0.tar.gz
StartedAt: 2011-02-24 20:52:35 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 21:03:37 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 662.3 seconds
RetCode: 0
Status:  OK 
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/maigesPack.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maigesPack/DESCRIPTION’ ... OK
* this is package ‘maigesPack’ version ‘1.15.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘maigesPack’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package ‘maigesPack’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c Minfo.c -o Minfo.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c bootstrapT.c -o bootstrapT.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c register.c -o register.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c robustCorr.c -o robustCorr.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c stats.c -o stats.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o maigesPack.so Minfo.o bootstrapT.o register.o robustCorr.o stats.o -L/home/biocbuild/bbs-2.8-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.8-bioc/meat/maigesPack.Rcheck/maigesPack/libs
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: marray
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.0040.0000.003
activeMod3.3000.0123.313
activeModScoreHTML1.6480.0001.646
activeNet4.7880.0324.821
activeNetScoreHTML4.7560.0164.771
addGeneGrps0.0000.0000.001
addPaths000
bootstrapCor0.0520.0000.051
bootstrapMI0.2890.0000.285
bootstrapT0.0040.0000.003
boxplot-methods170.082 4.792174.934
bracketMethods0.3400.0000.343
calcA0.1360.1360.272
calcW0.1480.1320.281
classifyKNN0.2680.0040.292
classifyKNNsc0.3880.0000.391
classifyLDA1.4440.0001.446
classifyLDAsc2.5360.0082.543
classifySVM0.6730.0080.681
classifySVMsc1.2400.0201.256
coerce-methods0.1560.0080.164
compCorr000
createMaigesRaw0.3680.0000.380
deGenes2by2BootT0.5840.0000.580
deGenes2by2Ttest0.3360.0000.336
deGenes2by2Wilcox0.3000.0000.302
deGenesANOVA0.3280.0080.334
designANOVA0.1240.0040.127
dim-methods0.0680.0040.073
getLabels0.0840.0040.088
hierM2.4320.0402.476
hierMde0.5080.0000.507
image-methods5.2320.0205.249
kmeansM2.3240.0202.355
kmeansMde0.5120.0040.516
loadData000
normLoc3.1690.0043.170
normOLIN0.0720.0000.071
normRepLoess0.0680.0000.069
normScaleLimma244.107 1.656245.970
normScaleMarray107.355 1.968109.324
plot-methods10.144 0.06810.344
plotGenePair0.1080.0040.112
print-methods0.1600.0000.163
relNet2TGF0.1560.0040.159
relNetworkB2.6120.0082.623
relNetworkM0.1000.0000.103
robustCorr0.0000.0000.001
selSpots0.6040.0080.611
show-methods0.1440.0120.157
somM2.3210.0242.352
somMde0.7000.0000.699
summarizeReplicates3.0840.0003.086
summary-methods0.1640.0000.162
tableClass1.140.001.14
tablesDE2.6880.0202.708