Package: maSigPro

Version: 1.23.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch maSigPro_1.23.0.tar.gz

StartedAt: 2011-02-24 16:10:46 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 16:11:53 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 67.2 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/maSigPro.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.23.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'maSigPro' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maSigPro)

name	user	system	elapsed
PlotGroups	0.048	0.001	0.049
PlotProfiles	0.008	0.001	0.008
T.fit	10.843	0.146	10.990
average.rows	0.005	0.001	0.005
data.abiotic	0.030	0.002	0.032
edesign.OD	0.002	0.001	0.002
edesign.abiotic	0.003	0.000	0.004
edesignCT	0.002	0.000	0.002
edesignDR	0.002	0.001	0.002
get.siggenes	4.285	0.065	4.351
i.rank	0.001	0.001	0.001
maSigPro	6.804	0.103	7.158
make.design.matrix	0.009	0.005	0.015
p.vector	2.304	0.043	2.346
position	0	0	0
reg.coeffs	0.000	0.000	0.001
see.genes	1.638	0.084	1.864
stepback	0.051	0.001	0.053
stepfor	0.213	0.003	0.217
suma2Venn	0.006	0.000	0.033
two.ways.stepback	0.182	0.003	0.185
two.ways.stepfor	0.229	0.003	0.233