Package: iFlow

Version: 2.3.4

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings iFlow_2.3.4.tar.gz

StartedAt: 2011-02-24 20:21:17 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 20:22:51 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 93.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: iFlow.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/iFlow.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iFlow/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iFlow’ version ‘2.3.4’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘iFlow’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ask.dialog: no visible binding for global variable ‘selected.channels’
ask.graphics.details: no visible binding for global variable
  ‘selected.channels’
openGraphics: no visible binding for global variable ‘value.y’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... WARNING
Found the following significant warnings:

  Warning: 'method' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/iFlow.Rcheck/00check.log’
for details

* installing *source* package ‘iFlow’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: fda
Loading required package: splines
Loading required package: zoo
Loading required package: mvoutlier
Loading required package: cluster
Xlib:  extension "RANDR" missing on display ":15757.0".
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (iFlow)

name	user	system	elapsed
GlobalLists	0.008	0.000	0.007
activeFlowset	0	0	0
activeNodeID	0	0	0
activeNodeName	0	0	0
activeWorkflow	0	0	0
getNewName	0	0	0
guiEnv	0	0	0
iflow	1.016	0.040	1.878
isAnyActive	0	0	0
show.message	0.000	0.000	0.001